Index

_

__call__() (species.GenomeDistanceCache method) __del__() (parallel.ParallelEvaluator method) (threaded.ThreadedEvaluator method) __getitem__() (aggregations.AggregationFunctionSet method) __lt__() (genes.BaseGene method) __reduce__() (distributed._ExtendedManager method) __repr__() (config.ConfigParameter method)

__str__() (genes.BaseGene method) (genome.DefaultGenome method) _check_exception() (in module distributed) _determine_mode() (in module distributed) _EXCEPTION_TYPE_BAD (in module distributed) _EXCEPTION_TYPE_OK (in module distributed) _EXCEPTION_TYPE_UNCERTAIN (in module distributed) _ExtendedManager (class in distributed)

A

activate() (nn.feed_forward.FeedForwardNetwork method) (nn.recurrent.RecurrentNetwork method) activation function, [1], [2], [3], [4], [5] activation_function ActivationFunctionSet (class in activations) activations (module) add() (activations.ActivationFunctionSet method) (aggregations.AggregationFunctionSet method) (reporting.ReporterSet method) add_activation() (genome.DefaultGenomeConfig method) add_aggregation() (genome.DefaultGenomeConfig method)

add_connection() (genome.DefaultGenome method) add_func() (multiparameter.MultiParameterSet method) add_reporter() (population.Population method) advance() (ctrnn.CTRNN method) (iznn.IZNN method) (iznn.IZNeuron method) aggregation function, [1], [2], [3] aggregation_function AggregationFunctionSet (class in aggregations) aggregations (module) attributes, [1], [2], [3], [4], [5], [6], [7] (module)

B

BadFunctionError BaseAttribute (class in attributes) BaseGene (class in genes) BaseReporter (class in reporting)

best_genome() (statistics.StatisticsReporter method) best_genomes() (statistics.StatisticsReporter method) best_unique_genomes() (statistics.StatisticsReporter method) bias, [1] BoolAttribute (class in attributes)

C

CHATTERING_PARAMS (in module iznn) check_structural_mutation_surer(), [1] (genome.DefaultGenomeConfig method) checkpoint (module) Checkpointer (class in checkpoint) chunked() (in module distributed) clamp() (attributes.FloatAttribute method) compatibility_disjoint_coefficient, [1], [2], [3] compatibility_threshold, [1] compatibility_weight_coefficient, [1], [2], [3], [4] complete_extinction() (reporting.BaseReporter method) (reporting.ReporterSet method) CompleteExtinctionException compute node, [1] compute_full_connections() (genome.DefaultGenome method) compute_spawn() (reproduction.DefaultReproduction static method) Config (class in config) config (module) config_item_name() (attributes.BaseAttribute method) ConfigParameter (class in config) configure_crossover() (genome.DefaultGenome method) configure_new() (genome.DefaultGenome method) conn_add_prob, [1], [2] conn_delete_prob, [1], [2]

connect_fs_neat_hidden() (genome.DefaultGenome method) connect_fs_neat_nohidden() (genome.DefaultGenome method) connect_full_direct() (genome.DefaultGenome method) connect_full_nodirect() (genome.DefaultGenome method) connect_partial_direct() (genome.DefaultGenome method) connect_partial_nodirect() (genome.DefaultGenome method) connection, [1], [2], [3], [4], [5], [6], [7], [8], [9] continuous-time, [1], [2] copy() (genes.BaseGene method) CPPN create() (ctrnn.CTRNN static method) (in module nn) (iznn.IZNN static method) (nn.feed_forward.FeedForwardNetwork static method) (nn.recurrent.RecurrentNetwork static method) create_connection() (genome.DefaultGenome static method) create_new() (reproduction.DefaultReproduction method) create_node() (genome.DefaultGenome static method) creates_cycle() (in module graphs) crossover, [1], [2], [3] crossover() (genes.BaseGene method) ctrnn CTRNN (class in ctrnn) ctrnn (module) CTRNNNodeEval (class in ctrnn)

D

default see X_default DefaultClassConfig (class in config) DefaultConnectionGene (class in genes) DefaultGenome, [1], [2] (class in genome) DefaultGenomeConfig (class in genome) DefaultNodeGene (class in genes) DefaultReproduction, [1] (class in reproduction)

DefaultSpeciesSet (class in species) DefaultStagnation (class in stagnation) discrete-time disjoint, [1], [2] distance() (genes.DefaultConnectionGene method) (genes.DefaultNodeGene method) (genome.DefaultGenome method) (iznn.IZNodeGene method) distributed (module) DistributedEvaluator (class in distributed)

E

elitism, [1], [2] enabled, [1] enabled_default, [1] end_generation() (checkpoint.Checkpointer method) (reporting.BaseReporter method) (reporting.ReporterSet method)

evaluate() (distributed.DistributedEvaluator method) (parallel.ParallelEvaluator method) (threaded.ThreadedEvaluator method) EvolvedMultiParameterFunction (class in multiparameter) examples, [1] excess, [1]

F

FAST_SPIKING_PARAMS (in module iznn) feed-forward see feedforward feed_forward, [1], [2], [3] feed_forward_layers() (in module graphs) feedforward, [1], [2] FeedForwardNetwork (class in nn.feed_forward) fitness, [1], [2], [3], [4], [5], [6], [7] fitness criterion

fitness function, [1], [2], [3], [4], [5], [6], [7], [8], [9] fitness_criterion, [1], [2], [3] fitness_min_divisor, [1], [2], [3] fitness_threshold, [1], [2], [3], [4], [5] FloatAttribute (class in attributes) format() (config.ConfigParameter method) found_solution(), [1], [2], [3] (reporting.BaseReporter method) (reporting.ReporterSet method) FuncAttribute (class in attributes)

G

gene, [1], [2] generation, [1], [2], [3], [4], [5] genes (module) genetic distance, [1], [2], [3] genome, [1], [2], [3], [4], [5] (module) GenomeDistanceCache (class in species) genomic distance, [1], [2], [3], [4], [5], [6], [7], [8], [9] get() (activations.ActivationFunctionSet method) (aggregations.AggregationFunctionSet method) get_compatibility_info() (genome.DefaultGenomeConfig method) get_config_params() (attributes.BaseAttribute method) (genes.BaseGene class method) get_fitness_mean() (statistics.StatisticsReporter method) get_fitness_median() (statistics.StatisticsReporter method)

get_fitness_stat() (statistics.StatisticsReporter method) get_fitness_stdev() (statistics.StatisticsReporter method) get_fitness_tmean() (statistics.StatisticsReporter method) get_fitnesses() (species.Species method) get_inqueue() (distributed._ExtendedManager method) get_max_time_step() (ctrnn.CTRNN method) get_MPF() (multiparameter.MultiParameterSet method) get_namespace() (distributed._ExtendedManager method) get_new_node_key() (genome.DefaultGenomeConfig method) get_outqueue() (distributed._ExtendedManager method) get_species() (species.DefaultSpeciesSet method) get_species_fitness() (statistics.StatisticsReporter method) get_species_id() (species.DefaultSpeciesSet method) get_species_sizes() (statistics.StatisticsReporter method) get_time_step_msec() (iznn.IZNN method) graphs (module)

H

hidden node, [1], [2] homologous, [1], [2]

host_is_local() (in module distributed) HyperNEAT

I

id info(), [1] (reporting.BaseReporter method) (reporting.ReporterSet method) init_attributes() (genes.BaseGene method) init_mean, [1], [2], [3] init_stdev, [1], [2], [3] init_type, [1], [2], [3] init_value() (attributes.BoolAttribute method) (attributes.FloatAttribute method) (attributes.FuncAttribute method) (attributes.StringAttribute method) initial_connection, [1], [2], [3], [4] input node, [1], [2] interpret() (config.ConfigParameter method)

INTRINSICALLY_BURSTING_PARAMS (in module iznn) InvalidActivationFunction InvalidAggregationFunction InvalidFunctionError is_master() (distributed.DistributedEvaluator method) is_primary() (distributed.DistributedEvaluator method) is_valid() (activations.ActivationFunctionSet method) (aggregations.AggregationFunctionSet method) iteritems() (in module six_util) iterkeys() (in module six_util) itervalues() (in module six_util) IZGenome (class in iznn) IZNeuron (class in iznn) IZNN (class in iznn) iznn (module) IZNodeGene (class in iznn)

K

key, [1], [2], [3], [4], [5], [6], [7]

L

LOW_THRESHOLD_SPIKING_PARAMS (in module iznn)

M

math_util (module) max_aggregation() (in module aggregations) max_median_min_aggregation() (in module aggregations) max_stagnation, [1] max_value, [1], [2], [3] maxabs_aggregation() (in module aggregations) maxabs_mean_aggregation() (in module aggregations) maxabs_tmean_aggregation() (in module aggregations) mean() (in module math_util) mean_aggregation() (in module aggregations) median() (in module math_util) median2() (in module math_util) median_aggregation() (in module aggregations) min_aggregation() (in module aggregations) min_species_size, [1], [2], [3] min_value, [1], [2], [3] MODE_AUTO (in module distributed) MODE_PRIMARY (in module distributed) MODE_SECONDARY (in module distributed) ModeError

multiparam_tmean_aggregation() (in module aggregations) multiparameter, [1] (module) MultiParameterFunction (class in multiparameter) MultiParameterSet (class in multiparameter) mutate see mutation mutate() (genes.BaseGene method) (genome.DefaultGenome method) mutate_add_connection() (genome.DefaultGenome method) mutate_add_node() (genome.DefaultGenome method) mutate_delete_connection() (genome.DefaultGenome method) mutate_delete_node() (genome.DefaultGenome method) mutate_power, [1], [2], [3] mutate_rate, [1], [2], [3], [4], [5], [6], [7], [8], [9] mutate_value() (attributes.BoolAttribute method) (attributes.FloatAttribute method) (attributes.FuncAttribute method) (attributes.StringAttribute method) mutation, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15]

N

nn (module) nn.feed_forward (module) nn.recurrent (module) no_fitness_termination, [1], [2], [3], [4] node, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10]

node_add_prob, [1], [2] node_delete_prob, [1], [2] NORM_EPSILON (in module math_util) num_hidden, [1] num_inputs, [1] num_outputs, [1]

O

options see X_options

output node, [1], [2]

P

parallel (module) ParallelEvaluator (class in parallel) parse() (config.ConfigParameter method) parse_config() (genes.BaseGene class method) (genome.DefaultGenome class method) (iznn.IZGenome class method) (reproduction.DefaultReproduction class method) (species.DefaultSpeciesSet class method) (stagnation.DefaultStagnation class method) pin, [1] pop_size, [1], [2], [3], [4] Population (class in population)

population (module) post_evaluate() (reporting.BaseReporter method) (reporting.ReporterSet method) (statistics.StatisticsReporter method) post_reproduction() (reporting.BaseReporter method) (reporting.ReporterSet method) primary compute node see primary node primary node, [1] product_aggregation() (in module aggregations) product_mean_aggregation() (in module aggregations)

R

rate_to_false_add, [1] rate_to_true_add, [1] recurrent, [1], [2], [3] RecurrentNetwork (class in nn.recurrent) REGULAR_SPIKING_PARAMS (in module iznn) remove() (reporting.ReporterSet method) remove_reporter() (population.Population method) replace_rate, [1], [2], [3] ReporterSet (class in reporting) reporting (module) reproduce() (reproduction.DefaultReproduction method)

reproduction, [1] (module) required_for_output() (in module graphs) reset() (ctrnn.CTRNN method) (iznn.IZNN method) (iznn.IZNeuron method) (nn.feed_forward.FeedForwardNetwork method) (nn.recurrent.RecurrentNetwork method) reset_on_extinction, [1], [2], [3], [4], [5] RESONATOR_PARAMS (in module iznn) response, [1] restore_checkpoint() (checkpoint.Checkpointer static method) run() (population.Population method)

S

save() (config.Config method) (genome.DefaultGenomeConfig method) (statistics.StatisticsReporter method) save_checkpoint() (checkpoint.Checkpointer method) save_genome_fitness() (statistics.StatisticsReporter method) save_species_count() (statistics.StatisticsReporter method) save_species_fitness() (statistics.StatisticsReporter method) secondary compute node see secondary node secondary node, [1] set_inputs() (iznn.IZNN method) set_node_value() (ctrnn.CTRNN method) single_structural_mutation, [1], [2], [3] six_util (module) size() (genome.DefaultGenome method) softmax() (in module math_util) speciate() (species.DefaultSpeciesSet method) species, [1], [2] Species (class in species) species (module) species_elitism, [1], [2] species_fitness_func, [1], [2] species_stagnant() (reporting.BaseReporter method) (reporting.ReporterSet method)

stagnation, [1], [2], [3], [4] (module) start() (distributed._ExtendedManager method) (distributed.DistributedEvaluator method) (threaded.ThreadedEvaluator method) start_generation() (checkpoint.Checkpointer method) (reporting.BaseReporter method) (reporting.ReporterSet method) stat_functions (in module math_util) statistics (module) StatisticsReporter (class in statistics) stdev() (in module math_util) StdOutReporter (class in reporting) stop() (distributed._ExtendedManager method) (distributed.DistributedEvaluator method) (threaded.ThreadedEvaluator method) StringAttribute (class in attributes) structural_mutation_surer, [1], [2], [3], [4] sum_aggregation() (in module aggregations) sum_mean_aggregation() (in module aggregations) sum_product_aggregation() (in module aggregations) sum_product_mean_aggregation() (in module aggregations) survival_threshold, [1], [2]

T

THALAMO_CORTICAL_PARAMS (in module iznn) threaded (module) ThreadedEvaluator (class in threaded)

tmean() (in module math_util) tmean_aggregation() (in module aggregations) TODO, [1], [2], [3], [4], [5], [6], [7], [8], [9], [10], [11], [12], [13], [14], [15], [16], [17], [18], [19], [20], [21], [22], [23], [24], [25], [26], [27]

U

UnknownConfigItemError UnknownFunctionError

update() (species.Species method) (stagnation.DefaultStagnation method)

V

variance() (in module math_util)

W

weight, [1] write_config() (config.DefaultClassConfig class method) (genome.DefaultGenome class method)

write_pretty_params() (in module config)

X

X_default, [1], [2], [3], [4]

X_options, [1], [2], [3], [4]